TYPE OF COURSE UNIT	Elective Course
LEVEL OF COURSE UNIT	Doctorate Of Science
YEAR OF STUDY	-
SEMESTER	-
NUMBER OF ECTS CREDITS ALLOCATED	10
NAME OF LECTURER(S)	Assistant Professor Hüseyin Kurtuldu
LEARNING OUTCOMES OF THE COURSE UNIT	At the end of this course, the students; 1) To be able to read and understand recent journal articles/patents related to optical biomedical devices as well as to design optics for new application areas 2) To gain an understanding of instrument systems such as spectroscopy and endoscopy 3) To acquire knowledge of advanced imaging and visualization techniques along with optical and quantum theorems 4) To learn advance microscopy techniques within specific areas of application
MODE OF DELIVERY	Face to face
PRE-REQUISITES OF THE COURSE	No
RECOMMENDED OPTIONAL PROGRAMME COMPONENT	None
COURSE DEFINITION	Light and color; General optics: geometric optics, wave optics, fiber optics; Diffraction, coupling, resolution and quantum operations Optical properties of tissue: absorption and scattering; Diffusion; Optical instrumentation: microscope, spectrometer, endoscope Bright-field, phase contrast and dark-field imaging; Polarized and fluorescent imaging Confocal scanning; New imaging techniques: STED, 4Pi, 2-photon; Photoacoustic and optical coherence tomography Raman spectroscopy; Advanced endoscopy and scanning imaging techniques; Advanced processing techniques for micro and nano visualization
COURSE CONTENTS	WEEK TOPICS 1st Week Light and color 2nd Week Review of optics: geometric optics, wave optics, and fiber optics 3rd Week Diffraction, interference, resolution and quantum processes 4th Week Optical properties of tissue - absorption and scattering 5th Week Diffusion 6th Week Optical instrumentation: microscope, spectrometer, endoscope 7th Week Bright-field, phase-contrast and dark-field imaging 8th Week Polarizing and Fluorescence imaging 9th Week Confocal scanning 10th Week New imaging techniques: STED, 4Pi, 2-photon 11th Week Photo-acoustic and Optical coherence tomography 12th Week Raman spectroscopy 13th Week Advanced endoscopy and scanning imaging techniques 14th Week Advanced processing for micro/nano visualization
RECOMENDED OR REQUIRED READING	Biomedical Optics: Principles and Imaging - Lihong V. Wang and Hsin-i Wu Introduction to Biophotonics, Paras N. Prasad Journal articles and recent patents.
PLANNED LEARNING ACTIVITIES AND TEACHING METHODS	Lecture,Discussion,Presentation,Project
ASSESSMENT METHODS AND CRITERIA	Quantity Percentage(%) Mid-term 1 30 Assignment 1 10 Total(%) 40 Contribution of In-term Studies to Overall Grade(%) 40 Contribution of Final Examination to Overall Grade(%) 60 Total(%) 100
ECTS WORKLOAD	Activities Number Hours Workload Midterm exam 1 72 72 Preparation for Quiz 0 0 0 Individual or group work 2 3 6 Preparation for Final exam 1 24 24 Course hours 14 3 42 Preparation for Midterm exam 1 24 24 Laboratory (including preparation) 0 0 0 Final exam 1 96 96 Homework 1 24 24 Total Workload 288 Total Workload / 30 9,6 ECTS Credits of the Course 10
LANGUAGE OF INSTRUCTION	English
WORK PLACEMENT(S)	No